It could be a corrupted Ministry of Magic official. This official wants to use the Muggle world for his own gain, and he sees Kate Beckett as a threat. He teams up with some dark wizards and tries to stop Harry and Kate from uncovering his plans. This would create a complex web of intrigue as Harry and Kate have to fight against not only dark magic but also the corruption within the wizarding world.
It could be a criminal mastermind who has a vendetta against Beckett or someone close to her. This antagonist might see the baby as a way to get back at Beckett, either by using the baby as bait or harming it to cause her pain.
Perhaps a long - lost relative of the Potter family who feels they were unjustly excluded from inheriting the manor. This relative could be jealous of Harry's status and the wealth associated with the manor. They might use dark magic to try and claim what they think is rightfully theirs, leading to a battle of magic and loyalty within the Potter family and among Harry's friends.
One idea could be a crossover where Kate Beckett, with her detective skills, is transported to the wizarding world of Harry Potter. She could help solve a mystery that has stumped the Ministry of Magic. Maybe it's a case of a dark wizard using Muggle - like technology in a devious way, and her knowledge of modern forensics combined with the magic of the wizarding world would make for an exciting story.
Maybe there could be a new antagonist, a dark shapeshifter who is jealous of Harry's power. This antagonist could be an old wizard who has been in hiding for centuries, waiting for the right time to emerge and take over the wizarding world. He sees Harry as a threat to his plans and tries to eliminate him.
Another possibility is a corrupted member of the Ministry of Magic. They might be trying to use Harry as a scapegoat to gain more power within the Ministry. They could be working with the Death Eaters or acting on their own, but they would be a significant obstacle for Harry as he tries to stay alive and free while on the run.
Perhaps a new dark wizard or witch who has infiltrated the Ministry of Magic and made sure Harry was sent to Azkaban. This antagonist could be working towards a bigger plan to take over the wizarding world and sees Harry as a major threat even when he's locked up.
It could be Voldemort. He might see Harry's new waterbending ability as a threat and try to find a way to counter it. Maybe he would seek out dark magic related to fire to oppose Harry's water powers.
It could be a new dark wizard who has risen to power. This wizard might see Harry as a threat to his plans, so he manipulates the situation to get Harry exiled.
Another possibility is a corrupted magical creature that has been influenced by dark magic from the 'sociates'. This creature could be intelligent and manipulative, causing chaos among the students at Hogwarts and the wizards in the 'sociates'. It would be difficult to defeat as it has unique abilities that are not well - known to either group.
Perhaps a group of dark wizards who think that by disrupting time, they can bring back the dark ages of wizardry. They target the Timekeeper as the only one who can stop them. They use dark spells and curses to try and stop the Timekeeper from fixing the time - related problems they create.