Instead of trying to fix the story, I am going to rewrite it. I have come up with a reboot, but the story will be different. I will still be going with a lot of the same events. The main story will not change. The attack of the bug God. The Necromancer King, etc. But many other aspects will change.
For starters, the world will be a game. There will not be as much interference by the gods, and most importantly all of the complications with Alex will not happen.
Alex and Yuri will still have a relationship, but it will not just be thrown at you as before. It will be built.
This's an experimental test for reading assistance in case.
We highly recommend you to enjoy the beauty of the original words.