Yes, Prue does die in the comic books.
Negan's fate in the comic books is that he eventually meets his end. But the circumstances and the events leading up to it are quite complex and involve various plot twists.
Yes, Michonne does die in the comic books.
Yes, Thanos does die in some comic book storylines. But the circumstances and the specific comics can vary.
Yes, Carl does die in some comic book storylines.
Sure does. Naraku meets his end in the comic series. His demise is a significant plot point and brings closure to his storyline.
As far as I know, Sabrina survives in the comic books. There might be alternate universes or special story arcs where her fate differs, but in the typical canon, she remains alive.
Yes, Rick does die in some comic book storylines. But the circumstances and details can vary depending on the specific comic arc.
Yondu does meet his end in the comic books. It's a plot point that brings about various consequences and emotional responses among the other characters.
Definitely not. Jughead is a staple character in the comics and his presence persists throughout. There's no instance of his death in the traditional comic book narratives.
Thor has experienced death in certain comic book arcs. However, comic book universes often have complex and mutable storylines, so his death isn't always the end. Sometimes he's resurrected or his story takes unexpected turns.